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Process manager for applications with multiple components
Foreman is a process manager commonly used during development of multi-component applications. For production, it allows allow you to either run your application directly or export it to some other process management format (i.e. init system service files). . Foreman uses a file called Procfile, which is the same mechanism for declaring what commands are run by your application’s dynos on the Heroku platform. It follows the process model. You can use a Procfile to declare various process types, such as multiple types of workers, a singleton process like a clock, or a consumer of the Twitter streaming API.
assigning taxonomic labels to short DNA sequences
Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm. . In its fastest mode of operation, for a simulated metagenome of 100 bp reads, Kraken processed over 4 million reads per minute on a single core, over 900 times faster than Megablast and over 11 times faster than the abundance estimation program MetaPhlAn. Kraken's accuracy is comparable with Megablast, with slightly lower sensitivity and very high precision.
Padre plugin to provide TextMate-like snippets
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Full-featured markdown parser and compiler
Marked implements all markdown features while having a high processing speed. It is also fully compatible with client-side javascript. . Additionally Marked also implements github flavored markdown. . This package contains the javascript module.
Common Lisp interface to the Apache mod-lisp module
cl-modlisp provides a Common Lisp interface to the mod_lisp Apache module. The mod_lisp is a low-level Apache interface. This package provides a higher level layer on top of mod_lisp. The package has support for CMUCL, SBCL, CLISP, AllegroCL, and Lispworks.
Task scheduler for heterogeneous multicore machines
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