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inference of bacterial microevolution using multilocus sequence data
ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance. . ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, it is recommend to use Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame.
generic Apache request library - Perl modules
The generic Apache request library (APR) contains modules for manipulating client request data with the Apache API from Perl and C. Functionality includes: . - parsing of application/x-www-form-urlencoded data - parsing of multipart/form-data - parsing of HTTP Cookies . This package contains the Perl bindings, which are simply a thin XS layer on top of libapreq, making them a lighter and faster alternative to CGI.pm and CGI::Cookie.
DLM - Distributed lock manager binaries
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GNU Java compiler (based on GCC) for the ppc64el architecture
This is the GNU Java compiler, which compiles java on platforms supported by the gcc compiler. It uses the gcc backend to generate optimized code. . This is a dependency package providing the default GNU Java cross-compiler for the ppc64el architecture.
Open Source Mathematical Software
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sphinx 3 speech recognition - development files
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